Google Scholar page
• Blanco-Ulate, B., Amrine, K.C.H., Collins, T.S., Rivero, R.M., Vicente, A.R., Morales-Cruz, A., Doyle, C.L., Ye, Z., Allen, G., Heymann, H., Ebeler, S.S., Cantu, D. 2015, “Developmental and metabolic plasticity of white-skinned grape berries in response to Botrytis cinerea during noble rot” Plant Phys. 2015
• Amrine, K.C.H., Blanco-Ulate, B., Riaz, S., Pap, D., Jones, L., Figueroa-Balderas, R., Walker, A.M., Cantu, D. 2015, “Comparative transcriptomics of Central Asian Vitis vinifera accessions reveals distinct defense strategies against powdery mildew.” Horticulture Research. 2:15037
• Morales-Cruz, A., Amrine, K.C.H., Blanco-Ulate, B., Lawrence, D.P., Travadon, R., Rolshausen, P., Baumgartner, K., Cantu, D. 2015, “Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens.” BMC Genomics. 16:469
• Lawrence, T.J., Kauffman, K.T., Amrine, K.C.H., Carper, D.L, Lee, R.S., Becich, P.J, Canales, C.J, Ardell, D.H. 2015, “FAST: FAST Analysis of Sequences Toolbox.” Frontiers in Genetics. 6:172.
• Amrine, K.C.H., Blanco-Ulate, B. Cantu, D. 2014, “Discovery of core biotic stress responsive genes in Arabidopsis by weighted gene co-expression network analysis”. PLoS One. 10(3): e0118731.
• Jones, L., Riaz, S., Morales-Cruz, A., Amrine, K.C.H., McGuire, B., Gubler, D.W., Walker, A.M., Cantu, D. 2014, “Adaptive Genomic Structural Variation in the Grape Powdery Mildew Pathogen, Erysiphe necator. BMC Genomics, 15:1081.
• Blanco-Ulate, B., Morales-Cruz, A., Amrine, K.C., Labavitch, J.M., Powell, A., Cantu, D. 2014, “Genome wide transcriptional profiling of Botrytis cinerea genes targeting plant cell walls during infections of different hosts.” Frontiers in Plant Science, 5:435.
Dissertation: Detecting phylogenetic signals from deep roots of the Tree of Life.
• Amrine, K.C.H., Swingley W.D., and Ardell D.A. 2014. “tRNA signatures reveal polyphyletic origins of streamlined SAR11 genomes among the Alphaproteobacteria.” PLoS Computational Biology, 10(2): e1003454
• Huzurbazar, S., Kolesov, G., Massey, S.E., Harris, K.C., Churbanov, A., and Liberles, D.A. 2010. “Lineage-specific differences in the amino acid substitution process.” Journal of Molecular Biology, 396:1410-1421.
• Li, M., Gu, R., Su, C.-C., Routh, M.D., Harris, K.C., Jewell, E.S., McDermott, G., and Yu, E.W. 2007. “Crystal structure of the transcriptional regulator AcrR from Escherichia coli.” Journal of Molecular Biology 374:591-603.
• Blanco-Ulate, B., Amrine, K.C.H., Collins, T.S., Rivero, R.M., Vicente, A.R., Morales-Cruz, A., Doyle, C.L., Ye, Z., Allen, G., Heymann, H., Ebeler, S.S., Cantu, D. 2015, “Developmental and metabolic plasticity of white-skinned grape berries in response to Botrytis cinerea during noble rot” Plant Phys. 2015
• Amrine, K.C.H., Blanco-Ulate, B., Riaz, S., Pap, D., Jones, L., Figueroa-Balderas, R., Walker, A.M., Cantu, D. 2015, “Comparative transcriptomics of Central Asian Vitis vinifera accessions reveals distinct defense strategies against powdery mildew.” Horticulture Research. 2:15037
• Morales-Cruz, A., Amrine, K.C.H., Blanco-Ulate, B., Lawrence, D.P., Travadon, R., Rolshausen, P., Baumgartner, K., Cantu, D. 2015, “Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens.” BMC Genomics. 16:469
• Lawrence, T.J., Kauffman, K.T., Amrine, K.C.H., Carper, D.L, Lee, R.S., Becich, P.J, Canales, C.J, Ardell, D.H. 2015, “FAST: FAST Analysis of Sequences Toolbox.” Frontiers in Genetics. 6:172.
• Amrine, K.C.H., Blanco-Ulate, B. Cantu, D. 2014, “Discovery of core biotic stress responsive genes in Arabidopsis by weighted gene co-expression network analysis”. PLoS One. 10(3): e0118731.
• Jones, L., Riaz, S., Morales-Cruz, A., Amrine, K.C.H., McGuire, B., Gubler, D.W., Walker, A.M., Cantu, D. 2014, “Adaptive Genomic Structural Variation in the Grape Powdery Mildew Pathogen, Erysiphe necator. BMC Genomics, 15:1081.
• Blanco-Ulate, B., Morales-Cruz, A., Amrine, K.C., Labavitch, J.M., Powell, A., Cantu, D. 2014, “Genome wide transcriptional profiling of Botrytis cinerea genes targeting plant cell walls during infections of different hosts.” Frontiers in Plant Science, 5:435.
Dissertation: Detecting phylogenetic signals from deep roots of the Tree of Life.
• Amrine, K.C.H., Swingley W.D., and Ardell D.A. 2014. “tRNA signatures reveal polyphyletic origins of streamlined SAR11 genomes among the Alphaproteobacteria.” PLoS Computational Biology, 10(2): e1003454
• Huzurbazar, S., Kolesov, G., Massey, S.E., Harris, K.C., Churbanov, A., and Liberles, D.A. 2010. “Lineage-specific differences in the amino acid substitution process.” Journal of Molecular Biology, 396:1410-1421.
• Li, M., Gu, R., Su, C.-C., Routh, M.D., Harris, K.C., Jewell, E.S., McDermott, G., and Yu, E.W. 2007. “Crystal structure of the transcriptional regulator AcrR from Escherichia coli.” Journal of Molecular Biology 374:591-603.
